PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.98
Common NameAMTR_s00021p00146370, LOC18442207
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 152aa    MW: 16992.6 Da    PI: 10.4115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.98genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-0871112955
                                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               r RR+ri ++f  L+ l+P        K++ a++L  A++Y+k+L+
  evm_27.model.AmTr_v1.0_scaffold00021.98  71 ARHRRHRISKRFKILQGLVPGG-----SKMDTASMLDGAIRYVKYLK 112
                                              699*****************95.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.32262111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1367117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1168117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-1068115No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1068114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-672111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEYYFCSLNC CSHQQDQVLQ QMNPQYRHHD PSLPCRVRSS HRSLGSRPKQ PKWTPTKCRT  60
KLSVDPQSVA ARHRRHRISK RFKILQGLVP GGSKMDTASM LDGAIRYVKY LKAQIWLHHF  120
MESVGSVLGE EMGSSLGSGV GLSGLVRGAD V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852492.11e-110PREDICTED: transcription factor HEC2
SwissprotQ9M0414e-26BH140_ARATH; Transcription factor bHLH140
TrEMBLW1Q0C61e-110W1Q0C6_AMBTC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP89411014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.17e-27APRATAXIN-like
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]